Asset Detail:
Integrated DataFrames of Most Prevalent Cancer Types - TopN (Top6/Top21)
Asset Detail:
Integrated DataFrames of Most Prevalent Cancer Types - TopN (Top6/Top21)
Overview
| ASSET LINK: | https://modac.cancer.gov/assetDetails?dme_data_id=NCI-DME-MS01-5103861 |
| PROGRAM NAME: | NCI-DOE Collaboration |
| STUDY NAME: | NCI-DOE Collaboration Cellular Level Pilot: Predictive Modeling for Pre-Clinical Screening |
| ASSET NAME: | Integrated DataFrames of Most Prevalent Cancer Types - TopN (Top6/Top21) |
| ASSET PATH: | /NCI_DOE_Archive/JDACS4C/JDACS4C_Pilot_1/anl_integrated_data_frames_topn |
Asset Attributes
| ATTRIBUTE | VALUE |
|---|---|
| ASSET NAME | Integrated DataFrames of Most Prevalent Cancer Types - TopN (Top6/Top21) |
| ASSET DESCRIPTION | The TopN DataFrames for Pilot 1 combine drug response data, gene expression data, and drug molecular descriptors into a single DataFrame to support building binary classification or regression machine learning models to predict drug response. These DataFrames include top N cancer types that have the most cell lines with the RNA-Seq and drug response data available. For more information, refer to the Source links. |
| ASSET IDENTIFIER | anl_integrated_data_frames_topn |
| ASSET TYPE | Dataset |
| IS REFERENCE DATASET | No |
| COLLECTION SIZE | 3.0 GB |
| DATA TYPE | RNA-Seq, Drug Response, Molecular Descriptors |
| SOURCE CCLE | https://portals.broadinstitute.org/ccle/data |
| SOURCE CTRP | https://portals.broadinstitute.org/ctrp/ |
| SOURCE GDSC | https://www.cancerrxgene.org/downloads/bulk_download |
| SOURCE NCI-60 - DTP | https://dtp.cancer.gov/databases_tools/bulk_data.htm |
| SOURCE GCSI | https://pharmacodb.pmgenomics.ca/datasets/4 |
Asset Files
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| FILE/COLLECTION | FILE SIZE | ACTIONS |
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